1  Cover

      2  Title Page

      3  Copyright

      4  Preface P.1. References

      5  1 Origins of Biogeography: A Personal Perspective 1.1. Introduction: a history of scientific practice 1.2. A history of phyto- and zoogeographical classification 1.3. Ecology versus taxonomy: populations not species 1.4. Conclusion 1.5. References

      6  2 Analytical Approaches in Biogeography: Advances and Challenges 2.1. Introduction 2.2. From narrative dispersal accounts to event-based methods (EBM) 2.3. From parsimony-based to semiparametric approaches 2.4. A new revolution: parametric approaches in biogeography 2.5. Expanding parametric models 2.6. Population-level and individual-based models 2.7. References

      7  3 Phylogeography 3.1. Introduction 3.2. The early days of phylogeography: cytoplasmic genomes and qualitative post hoc explanations of historical processes 3.3. Statistical phylogeography 3.4. Comparative phylogeography 3.5. Integrative studies 3.6. Conclusion 3.7. References

      8  4 Geophysical Biogeography 4.1. Introduction 4.2. Geophysical biogeography at large 4.3. Geophysical biogeography at regional scale 4.4. Conclusions 4.5. References

      9  5 Island Biogeography 5.1. The equilibrium theory of island biogeography 5.2. Insularity and the evolution of emblematic biotas 5.3. Island biogeography in the Anthropocene 5.4. References

      10  6 Cave Biogeography 6.1. Physical characteristics of subterranean environments 6.2. Diversity and adaptations of the cave fauna 6.3. Vicariance and dispersal shape the global distribution patterns of cave animals 6.4. Perspectives in subterranean biogeography 6.5. Acknowledgments 6.6. References

      11  7 Soil Bacterial Biogeography at the Scale of France 7.1. Introduction 7.2. Soil bacterial communities 7.3. Soil survey networks around the world 7.4. Bacterial alpha- and beta-diversity at the national scale 7.5. Spatial distribution and ecological attributes of bacterial taxa at a large scale 7.6. Large-scale bacterial co-occurrence networks (also called Bacteriosociology) 7.7. Do large-scale bacterial habitats exist? 7.8. Biogeography at the service of environmental diagnosis 7.9. Conclusion perspectives 7.10. References

      12  8 Fungal Biogeography 8.1. Introduction 8.2. Fungal evolutionary history 8.3. Biogeographic patterns 8.4. Functional and interactional biogeography of fungi 8.5. Fungal biogeography under global environmental change 8.6. The role of citizen science in the study of fungal biogeography 8.7. Future directions 8.8. References

      13  9 Freshwater Biogeography in a Nutshell 9.1. Introduction 9.2. Freshwater hotspots and patterns