Principles of Virology. Jane Flint
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animal models are surrogates for the events that occur during viral infections of humans.
Assay of Viruses
There are two main types of assay for detecting viruses: biological and physical. Because viruses were first recognized by their infectivity, the earliest assays focused on this most sensitive and informative property. However, biological assays such as the plaque assay and end-point titration methods do not detect noninfectious particles. In contrast, all particles are accounted for with physical assays such as electron microscopy or by immunological methods. Knowledge of the number of noninfectious particles is useful for assessing the quality of a virus preparation.
Measurement of Infectious Units
One of the most important procedures in virology is measuring the virus titer, the concentration of infectious virus particles in a sample. This parameter is determined by inoculating serial dilutions of virus into host cell cultures, chicken embryos, or laboratory animals and monitoring for evidence of virus multiplication. The response may be quantitative (as in assays for plaques, fluorescent foci, infectious centers, or abnormal growth and morphology) or all-or-none, in which the presence or absence of infection is measured (as in an end-point dilution assay). Please note that “titer” is not a verb.
Figure 2.6 Growth of viruses in embryonated eggs. The cutaway view of an embryonated chicken egg shows the different routes by which viruses are inoculated into eggs and the distinct compartments in which particular viruses may propagate.
Figure 2.7 Plaques formed by different animal viruses. (A) Photomicrograph of a single plaque formed by pseudorabies virus in bovine kidney cells. Shown are unstained cells (left) and cells stained with the chromogenic substrate X-Gal (5-bromo-4-chloro-3-indolyl-β-D-galactopyranoside), which is converted to a blue compound by the product of the lacZ gene carried by the virus (right). Courtesy of B. Banfield, Princeton University. (B) Plaques formed by poliovirus on human HeLa cells stained with crystal violet. (C) Illustration of the sequential spread of a cytopathic virus from an initial infected cell to neighboring cells, resulting in a plaque.
Plaque Assay
The measurement of virus titers by plaque assay was first developed for bacteriophages by d’Herelle in 1917 and then modified for animal viruses by Renato Dulbecco in 1952. In this procedure, monolayers of cultured cells are incubated with a preparation of virus to allow adsorption to cells. After removal of the inoculum, the cells are covered with nutrient medium containing a supplement, most commonly agar, which forms a gel. When the original infected cells release new progeny particles, the gel restricts their spread to neighboring uninfected cells. As a result, each infectious particle produces a circular zone of infected cells, a plaque. If the infected cells are damaged, the plaque can be distinguished from the surrounding monolayer. In time, the plaque becomes large enough to be seen with the naked eye (Fig. 2.7). Only viruses that cause visible damage of cultured cells can be assayed in this way. A movie that depicts the microscopic development of a plaque can be found at this link: http://bit.ly/Virology_VZVGFP.
For the majority of animal viruses, there is a linear relationship between the number of infectious particles and the plaque count (Fig. 2.8). One infectious particle is therefore sufficient to initiate infection, and the virus is said to infect cells with one-hit kinetics. Some examples of two-hit kinetics, in which two different types of virus particle must infect a cell to ensure replication, have been recognized. An example is the genomes of some (+) strand RNA viruses of plants that consist of two RNA molecules which are encapsidated separately. Both RNAs are required for infectivity. The dose-response curve in plaque assays for these viruses is therefore parabolic rather than linear (Fig. 2.8).
Figure 2.8 The dose-response curve of the plaque assay. The number of plaques produced by a virus with one-hit kinetics (red) or two-hit kinetics (blue) is plotted against the relative concentration of the virus. In two-hit kinetics, there are two classes of uninfected cells, those receiving one particle and those receiving none. The Poisson distribution can be used to determine the proportion of cells in each class: they are e–m and me–m (Box 2.12). Because one particle is not sufficient for infection, P(0) = e–m(1 + m). At a very low multiplicity of infection, this equation becomes P(i) = (1/2)m2 (where i = infection), which gives a parabolic curve.
The titer of a virus stock can be calculated in plaque-forming units (PFU) per milliliter (Box 2.5). The plaque assay may also be used to prepare clonal virus stocks. When one infectious virus particle initiates a plaque, the viral progeny within the plaque are biological clones, and virus stocks prepared from a single plaque are known as plaque purified. The tip of a small pipette is plunged into the overlay above the plaque, and the plug of agar containing the virus is recovered. The virus within the agar plug is eluted into buffer and used to prepare virus stocks. To ensure purity, this process is usually repeated at least one more time.
Fluorescent-Focus Assay
The fluorescent-focus assay, a modification of the plaque assay, can be done more rapidly and is useful in determining the titers of viruses that do not form plaques. The initial procedure is the same as in the plaque assay. However, after a period sufficient for adsorption and gene expression, cells are made permeable and incubated with an antibody raised against a viral protein. A second antibody, which recognizes the first, is then added. This second antibody is usually conjugated to a fluorescent molecule. The cells are then examined under a microscope at an appropriate wavelength. The titer of the virus stock is expressed in fluorescent-focus-forming units per milliliter. When the gene encoding a fluorescent protein is incorporated into the viral genome, foci may be detected without the use of antiviral antibodies.
METHODS
Calculating virus titer from the plaque assay
To calculate the titer of a virus in plaque-forming units (PFU) per milliliter, 10-fold serial dilutions of a virus stock are prepared in a buffer, and suitable aliquots are inoculated onto susceptible cell monolayers which are covered with an agar overlay (see figure). After a suitable incubation period, the monolayers are stained and the plaques are counted. To minimize error in calculating the virus titer, only plates containing between 10 and 100 plaques are counted, depending on the area of the cell culture vessel. Plates with >100 plaques are generally not counted because the plaques may overlap, causing inaccuracies. According to statistical principles, when 100 plaques are counted, the sample titer varies by ±10%. For accuracy, each dilution is plated in duplicate or triplicate (not shown in the figure).