Phytomicrobiome Interactions and Sustainable Agriculture. Группа авторов
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C., and Sundaresan, V. (2018). Extraction and 16S rRNA sequence analysis of microbiomes associated with rice roots. Bio‐protocol 8 (12): e2884.
20 Egamberdieva, D. et al. (2008). High incidence of plant growth stimulating bacteria associated with the rhizosphere of wheat grown on salinated soil in Uzbekistan. Environ. Microbiol. 10: 1–9.
21 Finkel, O.M., Delmont, T.O., Post, A.F., and Belkin, S. (2016). Metagenomic signatures of bacterial adaptation to life in the phyllosphere of a salt‐secreting desert tree. Appl. Environ. Microbiol. 82: 2854–2861.
22 Franzosa, E.A., Hsu, T., Sirota‐Madi, A. et al. (2015). Sequencing and beyond: integrating molecular “omics” for microbial community profiling. Nat. Rev. Microbiol. 13: 360–372.
23 Gevers, D., Knight, R., Petrosino, J.F. et al. (2012). The human microbiome project: a community resource for the healthy human microbiome. PLoS Biol. 10 (8): e1001377.
24 Goel, R., Suyal, D.C., Narayan et al. (2017a). Soil Metagenomics: a tool for sustainable agriculture. In: Mining of Microbial Wealth and MetaGenomics (eds. V.C. Kalia, Y. Shouche, H.J. Purohit and P. Rahi), 217–225. Springer Nature Singapore.
25 Goel, R., Suyal, D.C., Kumar, V. et al. (2017b). Stress‐tolerant beneficial microbes for sustainable agricultural production. In: Microorganisms for Green Revolution, Microorganisms for Sustainability (eds. D.G. Panpatte, Y.K. Jhala, H.N. Shelat and R.V. Vyas), 141–159. Springer Nature Singapore.
26 Goel, R., Kumar, V., Suyal, D.C. et al. (2017c). Root‐associated bacteria: Rhizoplane and endosphere. In: Plant‐Microbe Interactions in Agro‐Ecological Perspectives (eds. D.P. Singh, H.B. Singh and R. Prabha). Springer Nature Singapore Pvt Ltd. https://doi.org/10.1007/978‐981‐10‐5813‐4_9.
27 Goel, R., Kumar, V., Suyal, D.C. et al. (2018). Toward the unculturable microbes for sustainable agricultural production. In: Role of Rhizospheric Microbes in Soil (ed. V.S. Meena), 107–123. Springer Nature Singapore Pte Ltd.
28 Guo, J., Cole, J.R., Zhang, Q. et al. (2015). Microbial community analysis with ribosomal gene fragments from shotgun metagenomes. Appl. Environ. Microbiol. 82: 157–166.
29 Hamonts, K., Trivedi, P., Garg, A. et al. (2018). Field study reveals core plant microbiota and relative importance of their drivers. Environ. Microbiol. 20: 124–140.
30 Hardoim, P.R., van Overbeek, L.S., Berg, G. et al. (2015). The hidden world with in plants: ecological and evolutionary considerations for defining functioning of microbial endophytes. Microbiol. Mol. Biol. Rev. 79: 293–320.
31 Hayden, H.L., Savin, K.W., Wadeson, J. et al. (2018). Comparative meta transcriptomics of wheat Rhizosphere microbiomes in disease suppressive and non‐suppressive soils for Rhizoctoniasolani AG8. Front. Microbiol. 9: 859.
32 van der Heijden, M.G.A. and Hartmann, M. (2016). Networking in the plant microbiome. PLoS Biol. 14 (2): e1002378.
33 Hover, B. et al. (2018). Culture‐independent discovery of the malacidins as calcium‐dependent antibiotics with activity against multidrug‐resistant Gram‐positive pathogens. Nat. Microbiol. 3: 415–422.
34 Kennedy, A.C. and de Luna, L.Z. (2005). Rhiszosphere. In: Encyclopedia of Soils in the Environment (pp. 399–406).
35 Kgomotso, M., Maropola, A., Ramond, J.B., and Trindade, M. (2015). Impact of metagenomic DNAextraction procedures on the identifiable endophytic bacterial diversity in Sorghum bicolor (L. Moench). J. Microbiol. Methods 112: 104–117.
36 Knief, C., Delmotte, N., Chaffron, S. et al. (2012). Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice. ISME J. 6: 1378–1390.
37 Kumar, S., Suyal, D.C., Bhoriyal, M., and Goel, R. (2018a). Plant growth promoting potential of psychrotolerant Dyadobacter sp. for pulses and finger millet and impact of inoculation on soil chemical properties and diazotrophic abundance. J. Plant Nutr. 41 (8): 1035–1046.
38 Kumar, V., AlMomin, S., Al‐Aqeel, H. et al. (2018b). Metagenomic analysis of rhizosphere microflora of oil‐contaminated soil planted with barley and alfalfa. PLoS One 13 (8): e0202127.
39 Lauro, F.M., DeMaere, M.Z., Yau, S. et al. (2011). An integrative study of a meromictic lake ecosystem in Antarctica. ISME J. 5: 879–895.
40 Lebeis, S.L., Rott, M., Dangl, J.L., and Schulze‐Lefert, P. (2012). Culturing a plant microbiome community at the cross‐Rhodes. New Phytol. 196: 341–344.
41 Lin, W., Wu, L., Lin, S. et al. (2013). Metaproteomic analysis of ratoon sugarcane rhizospheric soil. BMC Microbiol. 13: 135.
42 López‐Pérez, M. and Mirete, S. (2014). Discovery of novel antibiotic resistance genes through metagenomics. Rec. Adv. DNA Gene Seq. 8: 15–19.
43 Maropola, M.K., Ramond, J.B., and Trindade, M. (2015). Impact of metagenomic DNAextraction procedures on the identifiable endophytic bacterial diversity in Sorghum bicolor (L. Moench). J. Microbiol. Methods 12: 104–117.
44 Mattarozzi, M., Manfredi, M., Montanini, B. et al. (2017). A metaproteomic approach dissecting major bacterial functions in the rhizosphere of plants living in serpentine soil. Anal. Bioanal. Chem. 409: 2327–2339.
45 Mendes, R., Paolina, G., and Raaijmaker, J.M. (2013). The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. FEMS Microbiol. Rev. 37: 634–663.
46 Mendes, R., Garbeva, P., and Raaijmakers, J.M. (2014). The rhizosphere microbiome: significance of plant beneficial, plant pathogenic and human pathogenic microorganisms. FEMS Microbiol. Rev. 37: 634–663.
47 Methe, B.A., Kelvin, Li., Talley, S.P., Gupta, N., Frank, B., Xu, W. et al. (2017). Functional genes that distinguish maize phyllosphere metagenomes in drought and well‐watered conditions. BioRxiv. 104331.
48 Mirete, S., de Figueras, C.G., and González‐Pastor, J.E. (2007). Novel nickel resistance genes from the Rhizosphere metagenome of plants adapted to acid mine drainage. Appl. Environ. Microbiol. 73 (19): 6001–6011.
49 Morris, C.E. and Kinkel, L.L. (2002). Fifty years of phylosphere microbiology: significant contributions to research in related fields. In: Phyllosphere Microbiology (eds. S.E. Lindow, E.I. Hecht‐Poinar and V. Elliott), 365–375. St. Paul, MN: APS Press.
50 Mukhtar, S., Ishaq, A., Hassan, S. et al. (2017). Comparison of microbial communities associated with halophyte (Salsolastocksii) and non‐halophyte (Triticum aestivum) using culture‐independent approaches. Pol. J. Microbiol. 66 (3): 353–364.
51 Ofaim, S., Ofek‐Lalzar, M., Sela, N. et al. (2017). Analysis of microbial functions in the rhizosphere using a metabolic‐network based framework for metagenomics interpretation. Front. Microbiol. 8: 1606.
52 Ofek‐Lalzar, M., Sela, N., Goldman‐Voronov, M. et al. (2014). Niche and host‐associated functional signatures of the root surface microbiome. Nat. Commun. 5: 4950.
53 Parnell, J.J., Berka, R., Young, H.A. et al. (2016). From the lab to the farm: an industrial perspective of plant beneficial microorganisms. Front. Plant Sci. 7: 1110.
54 Patrick, D.S., Sarah, L.W., Thomas, R. et al. (2009). Introducing mothur: open‐source, platform‐independent, community‐supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75 (23): 7537–7541.
55 Pétriacq, P., Williams, A., Cotton, A. et al. (2017). Metabolite profiling of non‐sterile rhizosphere soil. Plant J. 92 (1): 147–162.
56 Philippot, L., Raaijmakers, J.M., Lemanceau, P., and vander Putten, W.H. (2013). Going back to the roots: the microbial ecology of the rhizosphere. Nat. Rev. Microbiol. 11: 789–799.
57 Premalatha, K., Soni, R., Khan, M. et al. (2009). Exploration of Csp gene(s) from temperate and glacier soils of Indian Himalaya and in silico analysis of encoding proteins. Curr. Microbiol. 58: 343–348.
58 Qin, J., Li, R., Raes, J. et al. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59–65.
59 Rascovan,