Principles in Microbiome Engineering. Группа авторов

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Principles in Microbiome Engineering - Группа авторов


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Japanese Human Metagenome was established to study the gut microbiome of healthy Japanese and its microbial diversity, comparing with metagenomic data from HMP [294].

      1.4.2.2 Global Foundations

      Many multinational companies have jumped into the foray to help push forward microbiome research. These foundations are listed below:

       Bill and Melinda Gates foundation has supported 34 institutes/initiatives on the microbiome research, from 2008 to the current day.1

       The Biocodex Microbiota Foundation provides an annual grant of €200,000 for research on the structure of microbiota and the impact of microbiota dysbiosis [295].

       The Crohn's & Colitis Foundation has raised over $250 million toward the global IBD research [296].

       The W. GARFIELD WESTON foundation has set up the Weston Family Microbiome Initiative providing research grants of up to $200,000 on microbiome translational research to improve the health of Canadians [297].

       Wisconsin Alumni Research Foundation (WARF) supports projects on gut microbiome–linked Alzheimer's disease, the impact of day care on a child's microbiome, and the risk of infection with drug‐resistant pathogens [298].

      In this chapter, we compare different impacts of diet primarily based on wealth, age, and locality. From a socio‐economic standpoint, wealth influences the eating and lifestyle habits of individuals and in doing so impacts the microbiome. The age influence is mainly due to the differences in consumed nutrients composition affecting the microbiota of infants, children, teenagers, adults, and elderlies. In contrast, the locality provides different types of food, affected by geography, climate, and customs. Thus, we can observe differences in health levels in different countries. It is considered that wealth also influences diet choice and risk of some diseases, mainly because people with different levels of wealth may have different views on the consumption of foods (such as probiotics) and living habits.

      Designed diets are currently used to treat or prevent diseases, by controlling the amount of specific dietary components, probiotics, and prebiotics. These treating strategies have been explored in infection, inflammatory diseases, psychological diseases, cancers, metabolic disorders, and other diseases. The changes in the diet affect intestinal epithelial cells and intestinal barrier function as a direct means of interaction with the host. Dietary changes can also influence the microbiota composition, mainly by repressing pathogenic bacterium and promoting the growth of beneficial bacteria. The change in microbiota composition can also influence host immunity. Thus, the diet components that encourage specific species of microbes as means to control disease pathogenesis are currently investigated.

      These researches are being supported by various governmental, Non‐Governmental Organizations, and private institutions, indicating the importance of the field. It is clear that the role of diet indeed is an important aspect of host health and would merit further investigation.

      This work is supported by the Chinese National Key Research and Development Program (2018YFA0902604) and the Shenzhen Institutes of Advanced Technology External Funds (DWKF20190001).

      1 1 Huss, J. (2014). Methodology and ontology in microbiome research. Biol. Theory 9 (4): 392–400.

      2 2 Poliakov, E., Cooper, D.N., Stepchenkova, E.I., et al. (2015). Genetics in genomic era. Genet. Res. Int. 2015: 364960.

      3 3 Turnbaugh, P.J., Ley, R.E., Hamady, M., et al. (2007). The human microbiome project. Nature 449 (7164): 804–810.

      4 4 Gevers, D., Knight, R., Petrosino, J.F., et al. (2012). The human microbiome project: a community resource for the healthy human microbiome. PLoS Biol. 10 (8): e1001377.

      5 5 Torres, M.P., Chakraborty, S., Souchek, J., and Batra, S.K. (2012). Mucin‐based targeted pancreatic cancer therapy. Curr. Pharm. Des. 18 (17): 2472–2481.

      6 6 The Human Microbiome Project Consortium (2012). Structure, function and diversity of the healthy human microbiome. Nature 486 (7402): 207–214.

      7 7 Dewhirst, F.E., Chen, T., Izard, J., et al. (2010). The human oral microbiome. J. Bacteriol. 192 (19): 5002–5017.

      8 8 Zaura, E., Keijser, B.J.F., Huse, S.M., et al. (2009). Defining the healthy “core microbiome” of oral microbial communities. BMC Microbiol. 9: 259.

      9 9 Moffatt, M.F. and Cookson, W.O. (2017). The lung microbiome in health and disease. Clin. Med. (Lond.) 17 (6): 525–529.

      10 10 Goodrich, J.K., Waters, J.L., Poole, A.C., et al. (2014). Human genetics shape the gut microbiome. Cell 159 (4): 789–799.

      11 11 Grice, E.A., Kong, H.H., Conlan, S., et al. (2009). Topographical and temporal diversity of the human skin microbiome. Science 324 (5931): 1190–1192.

      12 12 Hilt, E.E., McKinley, K., Pearce, M.M., et al. (2014). Urine is not sterile: use of enhanced urine culture techniques to detect resident bacterial flora in the adult female bladder. J. Clin. Microbiol. 52 (3): 871–876.

      13 13 Mameli, C., Cattaneo, C., Panelli, S., et al. (2019). Taste perception and oral microbiota are associated with obesity in children and adolescents. PLoS One 14 (9): e0221656.

      14 14 Stewart, C.J., Ajami, N.J., O'Brien, J.L., et al. (2018). Temporal development of the gut microbiome in early childhood from the TEDDY study. Nature 562 (7728): 583–588.

      15 15 Vatanen, T., Franzosa, E.A., Schwager, R., et al. (2018). The human gut microbiome in early‐onset type 1 diabetes from the TEDDY study. Nature 562 (7728): 589–594.

      16 16 Ferretti, P., Pasolli, E., Tett, A., et al. (2018). Mother‐to‐infant microbial transmission from different body sites shapes the developing infant gut microbiome. Cell Host Microbe 24 (1): 133.e5–145.e5.

      17 17 Fox, C. and Eichelberger, K.Y. (2015). Maternal microbiome and pregnancy outcomes. Fertil. Steril. 104 (6): 1358–1363.

      18 18 Bik, E.M., Eckburg, P.B., Gill, S.R., et al. (2006). Molecular analysis of the bacterial microbiota in the human stomach. Proc. Natl. Acad. Sci. U.S.A. 103 (3): 732–737.

      19 19 Andersson, A.F., Lindberg, M., Jakobsson, H., et al. (2008). Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS One 3 (7): e2836.

      20 20 Dorer, M.S., Talarico, S., and Salama, N.R. (2009). Helicobacter pylori's unconventional role in health and disease. PLoS Pathog. 5 (10): e1000544.

      21 21 Booijink, C.C., El‐Aidy, S., Rajilić‐Stojanović, M., et al. (2010). High temporal and inter‐individual variation detected in the human ileal microbiota. Environ. Microbiol. 12 (12): 3213–3227.

      22 22 Zoetendal, E.G., Raes, J., van den Bogert, B., et al. (2012). The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates. ISME J. 6 (7): 1415–1426.

      23 23 Collado, M.C., Donat, E., Ribes‐Koninckx, C., et al. (2009). Specific duodenal and faecal bacterial groups associated with paediatric coeliac disease. J. Clin. Pathol. 62 (3): 264–269.

      24 24 Willing, B., Halfvarson, J., Dicksved, J., et al. (2009). Twin studies reveal specific imbalances in the mucosa‐associated microbiota of patients with ileal Crohn's disease. Inflamm. Bowel Dis. 15 (5): 653–660.

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