Lifespan. David Sinclair

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Lifespan - David  Sinclair


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103 Times as Many Cells as a Baby. About How Many Cells Does an Adult Have?,” Socratic, January 26, 2017, https://socratic.org/questions/a-newborn-baby-has-about-26-000-000-000-cells-an-adult-has-about-1-9-10-3-times-.

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C. B. Brachmann, J. M. Sherman, S. E. Devine, et al., “The SIR2 Gene Family, Conserved from Bacteria to Humans, Functions in Silencing, Cell Cycle Progression, and Chromosome Stability,” Genes & Development 9, no. 23 (December 1, 1995): 2888–902, http://genesdev.cshlp.org/content/9/23/2888.long; X. Bi, Q. Yu, J. J. Sandmeier, and S. Elizondo, “Regulation of Transcriptional Silencing in Yeast by Growth Temperature,” Journal of Molecular Biology 34, no. 4 (December 3, 2004): 893–905, https://www.ncbi.nlm.nih.gov/pubmed/15544800.

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It is one of the most interesting and important papers I’ve ever read. C. E. Shannon, “A Mathematical Theory of Communication,” Bell System Technical Journal 27, no. 3 (July 1948): 379–423, and 27, no. 4 (October 1948): 623–66, http://math.harvard.edu/~ctm/home/text/others/shannon/entropy/entropy.pdf.

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Research by the authors showed that mTORC1 signaling in cancer cells increases survival by “suppressing endogenous DNA damage, and may control cell fate through the regulation of CHK1.” X. Zhou, W. Liu, X. Hu, et al., “Regulation of CHK1 by mTOR Contributes to the Evasion of DNA Damage Barrier of Cancer Cells,” Nature Scientific Reports, May 8, 2017, https://www.nature.com/articles/s41598-017-01729-w; D. M. Sabatini, “Twenty-five Years of mTOR: Uncovering the Link from Nutrients to Growth,” Proceedings of the National Academy of Sciences of the United States of America 114, no. 45 (November 7, 2017): 11818–25, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5692607/.

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E. J. Calabrese, “Hormesis: A Fundamental Concept in Biology,” Microbial Cell 1, no. 5 (May 5, 2014): 145–49, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5354598/.

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Up to 69 percent of the human genome may be repetitive or derived from endogenous viral DNA repeats, compared to previous estimates of around half. A. P. de Konig, W. Gu, T. A. Castoe, et al., “Repetitive Elements May Comprise over Two-thirds of the Human Genome,” PLOS Genetics 7, no. 12 (December 7, 2011), https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228813/.

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Just what do we mean by the word finished when it comes to the sequencing of the human genome? Turns out, more than we thought back in the early 2000s. Regions of the genome previously thought of as nonfunctional are now emerging as playing potential roles in cancer, autism, and aging. S. Begley, “Psst, the Human Genome Was Never Completely Sequenced. Some Scientists Say It Should Be,” STAT, June 20, 2017, https://www.statnews.com/2017/06/20/human-genome-not-fully-sequenced/.

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Dating back to the 1960s, every three or four years the center has published a catalog of its strains of Saccharomyces cerevisiae. R. K. Mortimer, “Yeast Genetic Stock Center,” Grantome, 1998, http://grantome.com/grant/NIH/P40-RR004231-10S1.

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Yeast researchers have interesting names. John Johnston and my adviser Dick Dickinson are just two of them.

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In 2016, Dr. Yoshinori Ohsumi won the Nobel Prize in Physiology or Medicine for his work on autophagy in yeast. That’s when cells stave off extinction during hard times by digesting nonkey parts of themselves. B. Starr, “A Nobel Prize for Work in Yeast. Again!,” Stanford University, October 3, 2016, https://www.yeastgenome.org/blog/a-nobel-prize-for-work-in-yeast-again.

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Dawes’s delightful tour of his experiences in the world of academe and cell biology research is a refreshingly direct and personal account of a remarkable journey into yeast research over four decades. I. Dawes, “Ian Dawes—the Third Pope—Lucky to Be a Researcher,” Fems Yeast Research 6, no. 4 (June 2016), https://academic.oup.com/femsyr/article/16/4/fow040/2680350.

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I also learned, the hard way, that I should not drink copious quantities of yeasty beer.

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For four years after that, I sent Professor Melton a bottle of red wine for New Year’s, just to say thanks for changing my life. He never acknowledged any of them or ever smiled at me, either because he didn’t think that’s what an awardee should do or because he’s a very private person. At least he knew I was grateful. The selection of red wine turned out to be ironic, as that foodstuff helped propel my career a second time nine years later.

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C. E. Yu, J. Oshima, Y. H. Fu, et al., “Positional Cloning of the Werner’s Syndrome Gene,” Science 27, no. 5259 (April 12, 1996): 258–62, https://www.ncbi.nlm.nih.gov/pubmed/8602509.

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SIR2 stands for “silent information regulator 2.” When SIR2 is written in capitals and italics, it refers to the gene; when it’s written Sir2, it refers to the protein.

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In a paper published in late 1997, I showed how ERCs—rDNA circles—cause aging and shorten the life of yeast cells. D. A. Sinclair and L. Guarente, “Extrachromosomal rDNA Circles—A Cause of Aging in Yeast,” Cell 91, no. 7 (December 26, 1997): 1033–42, https://www.ncbi.nlm.nih.gov/pubmed/9428525.

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One way to think of the epigenome is as a cell’s software. In the same way digital files are stored in a phone’s memory and the software uses the ones and zeros to turn a phone into a clock, calendar, or music player, a cell’s information is stored as As, Ts, Gs, and Ts, and the epigenome uses those letters to direct a yeast cell to become male or a female and turn a mammalian cell into a nerve, a skin cell, or an egg.

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I am not the first person to use this analogy. One of the earliest uses of the piano metaphor I can find came from a study guide intended to accompany a Nova Science NOW program on epigenetics in 2007. “Nova ScienceNOW: Epigenetics,” PBS, http://www.pbs.org/wgbh/nova/education/viewing/3411_02_nsn.html.

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C. A. Makarewich and E. N. Olson, “Mining for Micropeptides,” Trends in Cell Biology 27, no. 9 (September 27, 2017): 685–96, https://www.ncbi.nlm.nih.gov/pubmed/28528987.

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D. C. Dolinoy, “The Agouti Mouse Model: An Epigenetic Biosensor for Nutritional and Environmental Alterations on the Fetal Epigenome,” Nutrition Reviews 66, suppl. 1 (August 2008): S7–11, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2822875/.

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The more extroverted you are, the longer your lifespan, while, perhaps unsurprisingly, pessimists and psychotics see significant increases in the risk of death at an earlier age. That’s according to a study of 3,752 twins 50 years or older that looked at the relationship between personality and lifespan through the prism of genetic influences. M. A. Mosing, S. E. Medland, A. McRae, et al., “Genetic Influences on Life Span and Its Relationship to Personality: A 16-Year Follow-up Study of a Sample of Aging Twins,” Psychosomatic Medicine 74, no. 1 (January 2012): 16–22, https://www.ncbi.nlm.nih.gov/pubmed/22155943. The authors considered definitions of extreme longevity, using multiple European twin registries. A. Skytthe, N. L. Pedersen, J. Kaprio, et al., “Longevity Studies in GenomEUtwin,” Twin Research 6, no. 5 (October 2003): 448–54, https://www.ncbi.nlm.nih.gov/pubmed/14624729.

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It was a eureka moment—discovering why yeast cells age. Supercoiled circles of ribosomal DNA pinch off the yeast chromosome and accumulate as the yeast divide, distracting the Sir2 enzyme from its main role of controlling genes for sex and reproduction. David A. Sinclair and Leonard Guarente, “Extrachromosomal rDNA Circles—A Cause of Aging in Yeast,” Cell 91 (December 26, 1997): 1033–42.

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D. A. Sinclair, K. Mills, and L. Guarente, “Accelerated Aging and Nucleolar Fragmentation in Yeast SGS1 Mutants,” Science 277, no. 5330 (August 29, 1997): 1313–16, https://www.ncbi.nlm.nih.gov/pubmed/9271578.

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Sinclair


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